CLI Reference

The CLI is a thin shell over the autoloop control plane. It launches runs, inspects artifacts, and manages memory and chains — but contains no loop logic itself. See Platform Architecture for how the CLI fits into the broader system.

autoloop exposes all functionality through a single binary with subcommands.

bash

# Via npm/node
node bin/autoloop <subcommand> [args...]

# Or if installed globally / via npx
autoloop <subcommand> [args...]

Environment

Variable	Purpose
`AUTOLOOP_PROJECT_DIR`	Override the project directory for subcommands that default to `.`
`AUTOLOOP_STATE_DIR`	State directory — used by the Pi adapter to write stream logs
`AUTOLOOP_ITERATION`	Current iteration number — set by the harness during runs
`AUTOLOOP_PROMPT`	Override the prompt sent to the backend
`AUTOLOOP_PROMPT_PATH`	Fallback prompt file path when `AUTOLOOP_PROMPT` is unset
`AUTOLOOP_BIN`	Path to the autoloops binary — used by the Pi adapter for prompt projection
`AUTOLOOP_LOG_LEVEL`	Current log level — exported by the harness. One of `debug`, `info`, `warn`, `error`, `none`.
`AUTOLOOP_REVIEW_MODE`	Set to `metareview` during review turns — changes the Pi stream log prefix
`AUTOLOOP_MEMORY_FILE`	Exported by the harness so agents can locate the memory file

Subcommands

`run`

Start a loop.

bash

autoloop run <preset-name|preset-dir> [prompt...] [flags]

The preset argument is required. It must be one of:

A bundled preset name (e.g. autocode, autoqa) — resolved to presets/<name>/ under the installed package.
An explicit path to a directory containing autoloops.toml (or autoloops.conf).
. to run from the current directory.

If the preset argument is missing, the CLI exits with a usage error. If the argument does not resolve to a valid preset directory or bundled preset name, the CLI exits with a resolution error. Unknown arguments are never silently reinterpreted as prompt text.

Flags:

Flag	Description
`-b <backend>`, `--backend <backend>`	Override the backend. `pi` selects the built-in Pi adapter. `kiro` selects the Kiro ACP backend (persistent session via `kiro-cli acp`). `claude` (or a path ending in `/claude`) adds `-p --dangerously-skip-permissions`. Config-based Claude command backends receive the same injection automatically. Any other value is treated as a shell command.
`-p <preset>`, `--preset <preset>`	Resolve a bundled preset name (for example `autocode`) or use an explicit custom preset directory. Useful when you want the prompt to start with path-like text or avoid positional ambiguity.
`-v`, `--verbose`	Enable verbose logging.
`--chain <steps>`	Run an inline chain instead of a single loop. `steps` is a comma-separated list of preset names (e.g. `autocode,autoqa,autoresearch`).

Examples:

bash

autoloop run autocode
autoloop run autocode "Fix the login bug"
autoloop run autocode -b kiro "Fix the login bug"
autoloop run --preset autocode "Fix the login bug"
autoloop run . "Fix the login bug" -b pi
autoloop run . --chain autocode,autoqa "Implement the approved change and validate it"

`emit`

Publish a coordination event to the journal.

bash

autoloop emit <topic> [payload...]

The event is validated against the current iteration's allowed-event set. If the topic is not allowed and is not a built-in coordination topic, the emit is rejected and an event.invalid entry is written to the journal. Allowed events are derived from the topology's handoff map for the current role.

Examples:

bash

autoloop emit doc.written "Wrote docs/cli.md covering all subcommands"
autoloop emit task.complete "All documentation gaps addressed"

`inspect`

Read projected artifacts from the journal and state directory.

bash

autoloop inspect <artifact> [selector] [project-dir] [--format <md|terminal|text|json|csv>]

If --format is omitted, inspect uses artifact-specific defaults:

scratchpad, prompt, memory, coordination, chain, metrics → terminal
output → text
journal → json

Artifacts:

Artifact	Selector	Formats	Description
`scratchpad`	—	`md`, `terminal`	Rich scratchpad projection for the current run. Prompt/review rendering uses a more compact view. `terminal` pretty-renders the markdown for a terminal.
`prompt`	`<iteration>`	`md`, `terminal`	The full prompt that was sent to the backend for a given iteration. `terminal` pretty-renders the markdown for a terminal.
`output`	`<iteration>`	`text`	The raw output returned by the backend for a given iteration.
`journal`	—	`json`	The full journal file contents.
`memory`	—	`md`, `terminal`, `json`	Materialized memory (`md`), terminal-rendered markdown (`terminal`), or raw JSONL (`json`).
`metrics`	`[run_id]`	`md`, `terminal`, `csv`, `json`	Per-iteration metrics table: role, event, elapsed time, exit code, outcome. Optional `run_id` selector filters to a specific run. `terminal` pretty-renders the markdown table for a terminal.
`coordination`	—	`md`, `terminal`	Coordination events from the current run. `terminal` pretty-renders the markdown for a terminal.
`chain`	—	`md`, `terminal`	Chain state — steps, outcomes, lineage. `terminal` pretty-renders the markdown for a terminal.
`topology`	—	`terminal`, `json`, `graph`	Topology structure — roles, emits, handoff map, and validation warnings. `graph` renders an ASCII directed graph of event flow.

Metrics output formats:

The metrics artifact produces a per-iteration table with columns: iteration, role, event, elapsed_s, exit_code, timed_out, outcome.

md — Markdown table followed by a summary line: total iterations, total elapsed seconds, and count of distinct events.
terminal — The same markdown table rendered for terminal display with ANSI styling.
csv — RFC 4180 CSV with header row. Fields containing commas, quotes, or newlines are double-quoted.
json — JSON array of objects. Numeric fields (iteration, elapsed_s, exit_code) are numbers or null. timed_out is a boolean.

When no metrics data exists, md outputs "No metrics data available.", csv outputs the header row only, and json outputs [].

Examples:

bash

autoloop inspect scratchpad                    # defaults to terminal
autoloop inspect scratchpad --format md
autoloop inspect prompt 5                     # defaults to terminal
autoloop inspect prompt 5 --format md
autoloop inspect output 3                     # defaults to text
autoloop inspect journal                      # defaults to json
autoloop inspect memory                       # defaults to terminal
autoloop inspect memory --format md
autoloop inspect coordination                 # defaults to terminal
autoloop inspect chain                        # defaults to terminal
autoloop inspect metrics                      # defaults to terminal
autoloop inspect metrics --format md
autoloop inspect metrics --format csv
autoloop inspect metrics --format json
autoloop inspect metrics run-mn9d3uk0-xi0m --format md
autoloop inspect topology                      # defaults to terminal
autoloop inspect topology --format graph       # ASCII directed graph
autoloop inspect topology --format json        # structured JSON

`memory`

Manage the loop's persistent memory store.

`memory list`

Print materialized memory entries with stable IDs.

bash

autoloop memory list [project-dir]

`memory status`

Print rendered size, configured budget, and active entry counts.

bash

autoloop memory status [project-dir]

`memory find`

Search active memory entries by text, category, key/value, source, or ID.

bash

autoloop memory find <pattern...>

`memory add learning`

Add a learning entry.

bash

autoloop memory add learning <text...>

The entry is tagged with source: "manual".

If the new entry pushes rendered memory over memory.prompt_budget_chars, the CLI warns that the prompt memory will be truncated.

`memory add preference`

Add a categorized preference entry.

bash

autoloop memory add preference <category> <text...>

`memory add meta`

Add a metadata entry.

bash

autoloop memory add meta <key> <value...>

`memory remove`

Tombstone an entry by ID.

bash

autoloop memory remove <id> [reason...]

If no reason is given, the source is recorded as "manual".

If the target ID is missing or already inactive, the CLI prints a warning instead of appending a no-op tombstone.

`dashboard`

Start the web dashboard.

bash

autoloop dashboard [options]

Launches an HTTP server serving the autoloop dashboard — a web UI for viewing runs, events, worktrees, and loop state. The dashboard reads from the .autoloop/ state directory in the resolved project directory.

Flags:

Flag	Description
`--port, -p <port>`	Port to listen on (default: `4800`)
`--host <host>`	Host to bind to (default: `127.0.0.1`)
`--project-dir <dir>`	Project directory (default: `.`)
`--help, -h`	Show help

The server handles SIGINT and SIGTERM for graceful shutdown. If the port is already in use, the process exits with code 1.

Examples:

bash

autoloop dashboard                           # http://127.0.0.1:4800
autoloop dashboard -p 3000                   # custom port
autoloop dashboard --host 0.0.0.0 -p 8080   # bind to all interfaces
autoloop dashboard --project-dir /path/to/project

`chain`

Manage named chains defined in chains.toml.

`chain list`

List all defined chains and their steps.

bash

autoloop chain list [project-dir]

Output shows each chain name followed by its step sequence (e.g. code-and-qa: autocode -> autoqa).

`chain run`

Run a named chain.

bash

autoloop chain run <name> [project-dir] [prompt...]

The chain must be defined in chains.toml. Each step runs as an isolated loop in .autoloop/chains/<chain-run-id>/step-<n>/. When a prompt is provided, it is passed directly to step 1 and also written into each step's handoff.md as the chain entry objective. Chains advance on bounded-success stops (completion_event, completion_promise, or max_iterations) and stop only on real failure reasons such as backend errors or timeouts.

`loops`

Operator surface for listing and inspecting runs. Reads from the run registry ({projectDir}/.autoloop/registry.jsonl), which is updated by the harness at lifecycle milestones.

`loops`

List active (running) loops.

bash

autoloop loops

Output is a concise table with columns: run ID, status, preset, iteration count, latest event, and last updated timestamp. When no runs are active, prints No active runs..

`loops --all`

List all runs (any status), most recent first.

bash

autoloop loops --all

`loops show <run-id>`

Show detailed information for a single run.

bash

autoloop loops show <run-id>

Displays: run ID, status, preset, objective, trigger, backend, iteration, latest event, stop reason (if terminal), created/updated timestamps, work directory, and state directory.

Partial run-ID matching is supported: if the given string is a unique prefix of a run ID, that run is shown. If the prefix is ambiguous, all matching run IDs are listed.

`loops artifacts <run-id>`

Show artifact file paths for a run.

bash

autoloop loops artifacts <run-id>

Displays paths to the journal file, registry file, state directory, and work directory. Supports the same partial run-ID matching as loops show.

`loops watch <run-id>`

Watch a run live by polling the registry.

bash

autoloop loops watch <run-id>

Polls the registry every 2 seconds and prints a compact progress line whenever the run's state changes (iteration, event, or status). When a run transitions into the watching or stuck health band for its preset, an advisory line is printed (e.g. [watch] autosimplify: no progress for 3m — investigate soon). When the run reaches a terminal status (completed, failed, timed_out, stopped), prints a full detail view and exits.

If the run is already in a terminal state when watch starts, prints the detail view immediately and exits. Supports partial run-ID matching.

Press Ctrl+C to stop watching.

`loops health`

Print an exception-focused health summary of all runs.

bash

autoloop loops health [--verbose]

Reads the registry and categorizes runs using preset-aware thresholds (see Operator Health for the full policy table):

Active: currently running and recently updated
Watching: running but quiet longer than the preset's warning threshold — investigate soon
Stuck: running but quiet longer than the preset's stuck threshold — likely needs intervention
Failed: failed or timed out within the last 24 hours
Completed: completed within the last 24 hours (suppressed by default)

When no exceptions exist, prints a one-line "All clear" summary. When exceptions exist (stuck, watching, or failed), prints them grouped by category with a table header. Pass --verbose to also list recent completions.

Designed for cron jobs and chat delivery: call this one command and forward the output.

Examples:

bash

autoloop loops                              # active runs
autoloop loops --all                        # all runs
autoloop loops show run-mn9d3uk0-xi0m       # full run ID
autoloop loops show run-mn9d                # partial match
autoloop loops artifacts run-mn9d3uk0-xi0m  # artifact paths
autoloop loops watch run-mn9d3uk0-xi0m      # live watch
autoloop loops health                       # exception summary
autoloop loops health --verbose             # include completions

`worktree`

Manage git worktrees used for run isolation.

bash

autoloop worktree [subcommand] [args...]

Worktrees provide git-level isolation for runs. Each isolated run gets its own worktree branch, and this command surfaces their status, lets you merge results back, and clean up when done. See Worktree & Isolation for the full model.

`worktree list`

List all tracked worktrees with status, branch, base, merge strategy, and creation time.

bash

autoloop worktree              # default subcommand
autoloop worktree list

Prints No worktrees found. when no worktree metadata exists.

`worktree show`

Display detailed information for a specific worktree.

bash

autoloop worktree show <run-id>

Shows: run ID, status (with (orphan) suffix if the worktree path no longer exists), branch, base branch, merge strategy, worktree path, created/merged/removed timestamps.

`worktree merge`

Merge a worktree branch back to the base branch.

bash

autoloop worktree merge <run-id> [--strategy <squash|merge|rebase>]

Flag	Description
`--strategy <squash\|merge\|rebase>`	Override the merge strategy recorded in the worktree metadata

On success, prints a confirmation. On failure, lists conflicting files and prints a recovery hint. Exits with code 1 on merge failure.

`worktree clean`

Remove worktree directories and metadata.

bash

autoloop worktree clean [--all] [--force] [<run-id>]

Flag	Description
`--all`	Clean all worktrees, including running ones
`--force`	Force deletion without prompts
`<run-id>`	Target a specific run (optional)

By default, removes orphaned worktrees (where the worktree path no longer exists on disk) and worktrees in terminal status (merged, failed, removed). Reports the count of cleaned and skipped worktrees.

Examples:

bash

autoloop worktree                                    # list all
autoloop worktree show run-mn9d3uk0-xi0m             # detail view
autoloop worktree merge run-mn9d3uk0-xi0m            # merge with recorded strategy
autoloop worktree merge run-mn9d3uk0-xi0m --strategy squash
autoloop worktree clean                              # clean orphans + terminal
autoloop worktree clean --all                        # clean everything
autoloop worktree clean --force run-mn9d3uk0-xi0m    # force-clean specific run

`pi-adapter`

Run the Pi backend adapter directly. This is normally called by the harness, not by users.

bash

autoloop pi-adapter [pi-command] [extra-args...]

The adapter resolves the prompt from AUTOLOOP_PROMPT, then falls back to projecting it via autoloop inspect prompt, then falls back to reading AUTOLOOP_PROMPT_PATH. It invokes Pi with -p --mode json --no-session plus any extra arguments, parses the NDJSON stream, and writes the raw stream to .autoloop/pi-stream.<iteration>.jsonl (or pi-review.<iteration>.jsonl in review mode).

Testing

Run the test suite via Vitest:

bash

npm test

Mock backend

A deterministic mock backend is included for tests and local debugging. It reads a JSON fixture file and replays the specified output, exit code, and optional event emission — no live LLM backend required.

bash

# Run a loop with the mock backend
autoloop run . -b "node dist/testing/mock-backend.js" \
  MOCK_FIXTURE_PATH=test/fixtures/backend/complete-success.json

# Or set the env var separately
export MOCK_FIXTURE_PATH=test/fixtures/backend/complete-success.json
autoloop run . -b "node dist/testing/mock-backend.js"

Fixture schema:

json

{
  "output": "text printed to stdout",
  "exit_code": 0,
  "delay_ms": 0,
  "emit_event": "task.complete",
  "emit_payload": "done"
}

Field	Type	Required	Description
`output`	string	yes	Text printed to stdout
`exit_code`	number	yes	Process exit code
`delay_ms`	number	no	Delay before output (for timeout testing)
`emit_event`	string	no	Event topic to emit via `autoloop emit`
`emit_payload`	string	no	Payload for the emitted event

Bundled fixtures in test/fixtures/backend/:

Fixture	Scenario
`complete-success.json`	Emits `task.complete`, exits 0, includes `LOOP_COMPLETE`
`invalid-event.json`	Emits `bogus.not.allowed`, exits 0
`no-completion.json`	No event, no promise, exits 0
`timeout.json`	30s delay (exceeds typical test timeout)
`non-zero-exit.json`	Exits 1

Developer Scripts

These npm scripts and tools support day-to-day development on the autoloop codebase.

`bin/dev` dispatcher

A single entry point for common dev tasks. Run bin/dev or bin/dev --help to see all subcommands.

bash

bin/dev <command> [args...]

Command	Delegates to	Description
`build`	`npm run build`	Compile TypeScript via `tsc`
`test [args]`	`npm test -- [args]`	Run test suite with Vitest
`test:watch`	`npm run test:watch`	Vitest in watch mode
`hooks`	`bin/install-hooks`	Install git hooks
`run [args]`	`node bin/autoloop [args]`	Run autoloop

Unknown subcommands print an error and the help text, then exit non-zero.

npm scripts

Script	Command	Description
`build`	`npm run build`	Compile TypeScript via `tsc`. Also serves as a type-check gate.
`test`	`npm test`	Run the full test suite with Vitest (`--experimental-vm-modules` enabled automatically).
`test:watch`	`npm run test:watch`	Run Vitest in watch mode for rapid feedback during development.

Git hooks

Local git hooks live in hooks/ and can be installed with:

bash

bin/install-hooks

This creates symlinks from .git/hooks/ to the project hooks/ directory. The script is idempotent — safe to re-run at any time.

Hook	What it runs	Purpose
`pre-commit`	`npm run build`	Catches type errors before they reach the repo.
`pre-push`	`npm test`	Catches test regressions before they reach the remote.

To bypass hooks in an emergency, use git commit --no-verify or git push --no-verify.

Vitest tips

bash

# Run a single test file
npm test -- test/cli.test.ts

# Run tests matching a pattern
npm test -- -t "chain"

# Run with verbose output
npm test -- --reporter=verbose

Naming compatibility

The canonical binary and package name is autoloop. The repository directory is named autoloop-ts (without the trailing s) for historical reasons.

Environment variables use the AUTOLOOP_ prefix. Preset configuration files may be named either autoloops.toml or miniloops.toml — the config loader accepts both.

CLI Reference ​

Environment ​

Subcommands ​

run ​

emit ​

inspect ​

memory ​

memory list ​

memory status ​

memory find ​

memory add learning ​

memory add preference ​

memory add meta ​

memory remove ​

dashboard ​

chain ​

chain list ​

chain run ​

loops ​

loops ​

loops --all ​

loops show <run-id> ​

loops artifacts <run-id> ​

loops watch <run-id> ​

loops health ​

worktree ​

worktree list ​

worktree show ​

worktree merge ​

worktree clean ​

pi-adapter ​

Testing ​

Mock backend ​

Developer Scripts ​

bin/dev dispatcher ​

npm scripts ​

Git hooks ​

Vitest tips ​

Naming compatibility ​

CLI Reference

Environment

Subcommands

`run`

`emit`

`inspect`

`memory`

`memory list`

`memory status`

`memory find`

`memory add learning`

`memory add preference`

`memory add meta`

`memory remove`

`dashboard`

`chain`

`chain list`

`chain run`

`loops`

`loops`

`loops --all`

`loops show <run-id>`

`loops artifacts <run-id>`

`loops watch <run-id>`

`loops health`

`worktree`

`worktree list`

`worktree show`

`worktree merge`

`worktree clean`

`pi-adapter`

Testing

Mock backend

Developer Scripts

`bin/dev` dispatcher

npm scripts

Git hooks

Vitest tips

Naming compatibility